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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63226007_63226904_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
63226007 - 63226904
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTTGTGTCAACAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTTCCTTAACT
Flanking Amino Acid:
AYGKKGQPDAKIPPNAKLFF
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
65.1
41.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.1
0.48
1
65.7
39.9
Minor 5ss
95.8
1.54
0.7
90.3
20.6
Minor BPS
88
1.28
1
92.9
35.6

Associated Gene:

Gene:
FKBP3
Ensembl Gene ID:
ENSAPLG00000011063
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011514
63222701 - 63226959
4259