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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63229376_63230521_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63229376 - 63230521
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTGTTCTGACTT
Flanking Amino Acid:
AAYNYNAWYQYNYQNAWNYG
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.4
0.68
0.8
73.1
36.9
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
49.9
0.07
1.8
67.6
44

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042732
63229322 - 63240988
11667
ENSAPLT00000039599
63229322 - 63239627
10306
ENSAPLT00000011249
63229322 - 63240988
11667