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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63233736_63233822_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63233736 - 63233822
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACTGGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATAATTTTAAGG
Flanking Amino Acid:
MLWAAFEEQQGNIDEARRIL
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.2
0.36
1
62
43.9
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
49.8
-0.1
1.7
54.63
40.7

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042732
63229322 - 63240988
11667
ENSAPLT00000039599
63229322 - 63239627
10306
ENSAPLT00000011249
63229322 - 63240988
11667