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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63233950_63234265_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63233950 - 63234265
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAACTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGTTTTCAACT
Flanking Amino Acid:
CALYEDFWIKYAKYMENHSI
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.2
0.61
0.8
71.4
33.3
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
61.7
0.45
1.6
75.09
42.3

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042732
63229322 - 63240988
11667
ENSAPLT00000039599
63229322 - 63239627
10306
ENSAPLT00000011249
63229322 - 63240988
11667