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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63237229_63237946_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63237229 - 63237946
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTAACTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTGTTTCTAACT
Flanking Amino Acid:
PTQLYSHHFQRFKDHVQNNL
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.5
0.42
0.9
66
35.5
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
66.5
0.6
1.6
83.86
37.3

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039599
63229322 - 63239627
10306
ENSAPLT00000011249
63229322 - 63240988
11667
ENSAPLT00000042732
63229322 - 63240988
11667