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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63238862_63238988_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63238862 - 63238988
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGGTA
5'SS Class:
major
3'SS Sequence:
GTTCTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTTCTCTTCATA
Flanking Amino Acid:
AMFYPTSTRMVYRRGLQAIP
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
67.7
37.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
77.4
0.62
0.8
72.5
32.3
Minor 5ss
33
-1.9
3.7
43.5
46
Minor BPS
57
0.21
1.7
69
37.5

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042732
63229322 - 63240988
11667
ENSAPLT00000039599
63229322 - 63239627
10306