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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63238862_63239501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63238862 - 63239501
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTTCTCTTCATA
Flanking Amino Acid:
RHDNIKQSDEVYRRGLQAIP
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
77.4
0.62
0.8
72.5
32.3
Minor 5ss
34.1
-1.8
2.9
42.6
44.2
Minor BPS
57
0.21
1.7
69
37.5

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011249
63229322 - 63240988
11667