About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63239152_63239254_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63239152 - 63239254
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
CATTTTTGGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATTGCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
54.2
44.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
72
0.49
1.1
72.9
41.9
Minor 5ss
30.4
-2.2
3.5
37.7
41.6
Minor BPS
46.9
-0.1
2
69.16
42.4

Associated Gene:

Gene:
PRPF39
Ensembl Gene ID:
ENSAPLG00000010785
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039599
63229322 - 63239627
10306