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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63244316_63244886_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63244316 - 63244886
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTCTTTGAAT
Flanking Amino Acid:
NVIQALCQHLDNYLLLQPFC
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72.7
0.51
0.9
71.1
38.7
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
72.1
0.78
1.3
85.07
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205