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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63246560_63248410_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63246560 - 63248410
Intron Length:
1851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTGAGC
Flanking Amino Acid:
TSRDALSITDRETTEAREVT
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
78.8
35.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.9
0.79
0.6
84.6
23.3
Minor 5ss
36.9
-1.5
3.3
51.7
45.1
Minor BPS
57.5
0.22
1.9
71.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205