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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63248530_63248843_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63248530 - 63248843
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAATG
Flanking Amino Acid:
KEFVSNLRQKGLGEMPLDTP
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.2
0.61
0.9
72.5
37.3
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
48.7
-0.2
1.9
60.28
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205