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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63249635_63252962_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63249635 - 63252962
Intron Length:
3328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTACTAAGCA
Flanking Amino Acid:
ALCSLINGGQSHLHAAVRRC
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
80.7
0.69
0.9
77.8
36.7
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
56.2
0.19
2.1
76.46
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205