Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63253199_63253600_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

63253199 - 63253600

Intron Length:

402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAAATTT

5'SS Class:

major

3'SS Sequence:

TTCCTGTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

ACATTATTCATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.2

33.8

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

76.9

0.6

72.1

37.9

Minor 5ss

39.6

-1.2

3.2

47.2

Minor BPS

-0.1

1.9

63.57

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011124

63242488 - 63270692

28205