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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63255325_63255645_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63255325 - 63255645
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
80.7
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
41.6
-0.9
3.1
58
40.7
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205