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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63255815_63257832_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63255815 - 63257832
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
GGTGCATTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
48.3
-0
1.9
66.7
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205