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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63269112_63270535_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63269112 - 63270535
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTGAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.9
0.54
1.1
78.1
34.2
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
61
0.34
1.4
72.26
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010672
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011124
63242488 - 63270692
28205