About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63286923_63290087_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
63286923 - 63290087
Intron Length:
3165

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCCTGCCCA
5'SS Class:
weak_major
3'SS Sequence:
CAAGCCTCACGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGTCACTGAAGT
Flanking Amino Acid:
DGMIYAIGGYGCFCTCSMER
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.3
47.4
42.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
44.3
-0.3
1.6
40.5
38.8
Minor 5ss
28.9
-2.4
3.8
31.6
42.2
Minor BPS
49.8
0.06
2
72.75
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025251
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041470
63286470 - 63292288
5819