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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_632981_637794_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
632981 - 637794
Intron Length:
4814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGATAGTAAAAA
Flanking Amino Acid:
YQNWRRKIQTNFPLLSNKKP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
41.7
-0.6
2.4
55.43
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016293
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016998
612390 - 642461
30072