Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63500837_63525191_F

Intron Information:

Intron Rank:

147179

Intron Class:

major

Intron Phase:

Intron Coordinates:

63500837 - 63525191

Intron Length:

24355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGCACA

5'SS Class:

major

3'SS Sequence:

TTTCCTCCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TTTCTGACAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

1.2

64.5

41.4

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

87.5

0.84

0.6

85.4

21.9

Minor 5ss

41.7

-0.9

2.8

45.2

Minor BPS

43.9

-0.3

2.3

70.25

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034496

63500705 - 63525656

24952