About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63500837_63532765_F

Intron Information:

Intron Rank:
147181
Intron Class:
major
Intron Phase:
Intron Coordinates:
63500837 - 63532765
Intron Length:
31929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
GCATCATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTGCATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
64.5
41.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.1
0.52
1
65.8
39.7
Minor 5ss
41.7
-0.9
2.8
51
45.2
Minor BPS
49.3
0.03
2.4
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029282
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045461
63500705 - 63540170
39466