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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63537831_63538829_F

Intron Information:

Intron Rank:
147176
Intron Class:
major
Intron Phase:
Intron Coordinates:
63537831 - 63538829
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TCTCATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AGACACATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.6
0.78
0.8
76.4
37.3
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
46.8
-0.2
1.7
54.72
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029282
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046782
63525192 - 63540170
14979
ENSAPLT00000045461
63500705 - 63540170
39466
ENSAPLT00000033625
63500078 - 63540170
40093