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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63538936_63539043_F

Intron Information:

Intron Rank:
147172
Intron Class:
major
Intron Phase:
Intron Coordinates:
63538936 - 63539043
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGAAT
5'SS Class:
major
3'SS Sequence:
ATTTCTGATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCCAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.6
33.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.4
0.48
1
66.3
39.4
Minor 5ss
28.6
-2.5
3.1
39.3
46.2
Minor BPS
64
0.52
1.9
87.92
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029282
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033625
63500078 - 63540170
40093
ENSAPLT00000026639
63538830 - 63548839
10010
ENSAPLT00000045461
63500705 - 63540170
39466