Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63539164_63539497_F

Intron Information:

Intron Rank:

147178

Intron Class:

major

Intron Phase:

Intron Coordinates:

63539164 - 63539497

Intron Length:

334

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ACG|GCGAGTTTG

5'SS Class:

major

3'SS Sequence:

TTCTTAAATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

ACTTCTTAAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.3

66.6

44.9

Major BPS

82.2

0.8

71.9

35.8

Major PPT

73.2

0.52

0.9

71.9

37.3

Minor 5ss

28.5

-2.5

3.9

40.9

45.3

Minor BPS

64.6

0.54

1.6

77.48

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045461

63500705 - 63540170

39466

ENSAPLT00000033625

63500078 - 63540170

40093