About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63974785_63986150_F

Intron Information:

Intron Rank:
142890
Intron Class:
major
Intron Phase:
Intron Coordinates:
63974785 - 63986150
Intron Length:
11366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
GGAAGTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
75.8
0.58
0.9
67.3
39
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
49.7
-0
1.8
57.63
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027020
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024695
63971901 - 63986383
14483