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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_63974785_63986404_F

Intron Information:

Intron Rank:
142891
Intron Class:
major
Intron Phase:
Intron Coordinates:
63974785 - 63986404
Intron Length:
11620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
AGTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTCTTCTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.5
0.71
0.8
77.9
35.9
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
51.7
-0
1.7
57.37
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027020
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027089
63974520 - 63986543
12024