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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64106606_64109931_F

Intron Information:

Intron Rank:
139284
Intron Class:
major
Intron Phase:
Intron Coordinates:
64106606 - 64109931
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
80
0.68
0.8
74.9
33.4
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024991
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046403
64106535 - 64110986
4452