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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64109408_64109931_F

Intron Information:

Intron Rank:
139283
Intron Class:
major
Intron Phase:
Intron Coordinates:
64109408 - 64109931
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGCTCAT
5'SS Class:
major
3'SS Sequence:
TCCATTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.4
60.9
45.3
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
80
0.68
0.8
74.9
33.4
Minor 5ss
36.4
-1.5
3.1
50.3
46
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024991
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036895
64108919 - 64110986
2068