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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64143222_64144050_R

Intron Information:

Intron Rank:
129649
Intron Class:
major
Intron Phase:
Intron Coordinates:
64143222 - 64144050
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTACCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
68
0.56
1.7
78.59
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016921
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038155
64142836 - 64144698
1863
ENSAPLT00000018421
64142836 - 64155831
12996
ENSAPLT00000017840
64142836 - 64144698
1863