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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64161730_64161819_F

Intron Information:

Intron Rank:
129408
Intron Class:
major
Intron Phase:
Intron Coordinates:
64161730 - 64161819
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCCTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.8
85.4
28.1
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
49.4
0.03
1.7
62.87
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019595
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028830
64150593 - 64162073
11481