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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64250002_64282664_F

Intron Information:

Intron Rank:
146943
Intron Class:
major
Intron Phase:
Intron Coordinates:
64250002 - 64282664
Intron Length:
32663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTTCCTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.2
0.63
0.8
72.3
32.4
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
49.2
-0
2
65.91
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029138
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029674
64249888 - 64283311
33424