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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64275111_64282664_F

Intron Information:

Intron Rank:
146944
Intron Class:
major
Intron Phase:
Intron Coordinates:
64275111 - 64282664
Intron Length:
7554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTTCCTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.2
0.63
0.8
72.3
32.4
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
49.2
-0
2
65.91
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029138
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030043
64274788 - 64310412
35625