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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_64282744_64309732_F

Intron Information:

Intron Rank:
146945
Intron Class:
major
Intron Phase:
Intron Coordinates:
64282744 - 64309732
Intron Length:
26989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTTGTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.1
0.7
0.9
81.2
36.5
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
40.4
-0.6
3.6
70.84
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029138
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030043
64274788 - 64310412
35625