About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6440438_6461752_F

Intron Information:

Intron Rank:
137464
Intron Class:
major
Intron Phase:
Intron Coordinates:
6440438 - 6461752
Intron Length:
21315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTCTTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.9
0.63
0.9
72.8
32
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
49.7
0.05
1.8
68.05
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024008
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040695
6440166 - 6482484
42319