About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6479899_6482138_F

Intron Information:

Intron Rank:
137466
Intron Class:
major
Intron Phase:
Intron Coordinates:
6479899 - 6482138
Intron Length:
2240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GTGTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
75
0.62
1.1
77.2
36
Major PPT
77.7
0.62
0.8
69.6
35.7
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
67
0.62
1.8
80.43
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024008
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040695
6440166 - 6482484
42319