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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6480867_6482138_F

Intron Information:

Intron Rank:
137460
Intron Class:
major
Intron Phase:
Intron Coordinates:
6480867 - 6482138
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GTGTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
75
0.62
1.1
77.2
36
Major PPT
77.7
0.62
0.8
69.6
35.7
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
67
0.62
1.8
80.43
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024008
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026882
6480839 - 6490721
9883