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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6482241_6482325_F

Intron Information:

Intron Rank:
137461
Intron Class:
major
Intron Phase:
Intron Coordinates:
6482241 - 6482325
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
ACTGTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTATTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
59.6
42.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.6
0.67
0.9
72.5
37.1
Minor 5ss
44.5
-0.6
2.8
52
45.9
Minor BPS
64.3
0.45
1.3
66.81
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024008
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026882
6480839 - 6490721
9883