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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6482378_6483089_F

Intron Information:

Intron Rank:
137462
Intron Class:
major
Intron Phase:
Intron Coordinates:
6482378 - 6483089
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CTAACTTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
48.5
-0
1.9
65.55
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024008
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026882
6480839 - 6490721
9883