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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6483200_6490660_F

Intron Information:

Intron Rank:
137463
Intron Class:
major
Intron Phase:
Intron Coordinates:
6483200 - 6490660
Intron Length:
7461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024008
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026882
6480839 - 6490721
9883