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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6530941_6532531_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6530941 - 6532531
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GATTAATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
ATTGCCTTGATT
Flanking Amino Acid:
YKQATYGYYLENPEEFQDAT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
74.4
0.55
1
66.6
43.6
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
74
0.84
1.3
85.14
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005489
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005680
6526039 - 6536364
10326