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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6548449_6578646_F

Intron Information:

Intron Rank:
132286
Intron Class:
major
Intron Phase:
Intron Coordinates:
6548449 - 6578646
Intron Length:
30198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTATTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.7
0.6
0.8
69.3
36.9
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
56.4
0.28
2
82.31
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019129
6548226 - 6605544
57319