Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6578741_6605248_F

Intron Information:

Intron Rank:

132287

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6578741 - 6605248

Intron Length:

26508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCTTC

5'SS Class:

weak_major

3'SS Sequence:

TTTTCCTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TTTTCCTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

74.9

36.3

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

92.9

0.96

0.6

87.9

22.2

Minor 5ss

65.8

0.53

2.2

40.1

Minor BPS

83.6

1.05

1.4

91.85

28.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043981

6578085 - 6605544

27460

ENSAPLT00000019129

6548226 - 6605544

57319