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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_660690_661746_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
660690 - 661746
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
ACATCGTTTACT
Flanking Amino Acid:
LGIYAFDVEEGKFYCKPHFT
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
64.4
41.5
Major BPS
65
0.37
1.3
75
40
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
31.4
-2.1
3
38.9
46.2
Minor BPS
49.8
0.07
2.3
70.98
45.5

Associated Gene:

Gene:
MICAL2
Ensembl Gene ID:
ENSAPLG00000015960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016689
657280 - 710419
53140
ENSAPLT00000045999
659967 - 710419
50453
ENSAPLT00000037244
659967 - 710419
50453
ENSAPLT00000032052
657280 - 710419
53140
ENSAPLT00000020974
659967 - 710419
50453