Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_670350_674373_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

670350 - 674373

Intron Length:

4024

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTCAT

5'SS Class:

strong_major

3'SS Sequence:

GCTTGAGAAATAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

TTGTGCTAAAGT

Flanking Amino Acid:

NAPNTIFRRQLGWKVLPFLL

Intron Amino Acid Position:

727

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.9

38.6

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

50.3

0.01

1.1

44.2

40.7

Minor 5ss

34.5

-1.8

3.3

47.2

Minor BPS

49.5

0.04

2.3

75.11

47.7

Associated Gene:

Gene:

MICAL2

Ensembl Gene ID:

ENSAPLG00000015960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045999

659967 - 710419

50453