Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_670539_671148_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

670539 - 671148

Intron Length:

610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAATATT

5'SS Class:

strong_major

3'SS Sequence:

TACACAGAGTAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTAGAT

U12 Branch Point Sequence:

TTCTGCTCTACA

Flanking Amino Acid:

SMFGYMEFPKLPTKGLSHSQ

Intron Amino Acid Position:

864

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.8

89.3

23.4

Major BPS

61.4

0.28

1.3

60.7

45.9

Major PPT

45.7

-0.2

1.2

42.3

41.3

Minor 5ss

35.6

-1.6

50.6

45.9

Minor BPS

48.4

-0.1

2.3

67.56

44.6

Associated Gene:

Gene:

MICAL2

Ensembl Gene ID:

ENSAPLG00000015960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016689

657280 - 710419

53140