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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_671688_673151_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
671688 - 673151
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
AAGTGTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTTCACT
Flanking Amino Acid:
SLLSPQPKRQFQVVARTAHE
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.9
0.4
1
58.2
46.5
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
67.6
0.63
1.7
85.39
35.1

Associated Gene:

Gene:
MICAL2
Ensembl Gene ID:
ENSAPLG00000015960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016689
657280 - 710419
53140