Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_673257_674373_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

673257 - 674373

Intron Length:

1117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTCAT

5'SS Class:

strong_major

3'SS Sequence:

AATGCTTTACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

GTCTTCATAATT

Flanking Amino Acid:

NAPNTIFRRQEQIDRPALVS

Intron Amino Acid Position:

722

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.9

38.6

Major BPS

81.6

0.78

0.8

24.9

Major PPT

56.4

0.14

1.2

54.3

44.2

Minor 5ss

34.5

-1.8

3.3

47.2

Minor BPS

62.6

0.48

1.6

77.07

39.7

Associated Gene:

Gene:

MICAL2

Ensembl Gene ID:

ENSAPLG00000015960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032052

657280 - 710419

53140

ENSAPLT00000016689

657280 - 710419

53140