Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_675182_679335_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

675182 - 679335

Intron Length:

4154

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTACTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATGCAT

U12 Branch Point Sequence:

TTTTGCTTTACT

Flanking Amino Acid:

LTLPRKRVPKVEGKTEENET

Intron Amino Acid Position:

669

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

78.8

38.3

Major BPS

58.4

0.21

1.3

69.4

37.7

Major PPT

83.5

0.75

0.9

80.9

36.6

Minor 5ss

45.6

-0.5

2.9

46.2

Minor BPS

69.9

0.71

2.1

92.33

36.7

Associated Gene:

Gene:

MICAL2

Ensembl Gene ID:

ENSAPLG00000015960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032052

657280 - 710419

53140

ENSAPLT00000020974

659967 - 710419

50453