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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6793505_6803782_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6793505 - 6803782
Intron Length:
10278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTCTTTCATT
Flanking Amino Acid:
AMEPPDNILKKLPAPLLDDT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.2
0.66
0.8
74
29.8
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
61.7
0.45
1.7
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029267
6793105 - 6818136
25032