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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6803905_6813154_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6803905 - 6813154
Intron Length:
9250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTGTTTCCACA
Flanking Amino Acid:
GLAVGTLLLIEEDKYGVYSN
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
80.9
32.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
35.8
-1.6
2.6
41.2
39
Minor BPS
47.7
-0.1
2
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022382
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029267
6793105 - 6818136
25032
ENSAPLT00000020730
6803725 - 6818529
14805