About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_682366_682457_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
682366 - 682457
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
CGACTAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATCTCGACT
Flanking Amino Acid:
IRRSVNLSRRESDVRPNKLL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
33.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
64
0.32
1
55.8
38.8
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
57.8
0.33
1.6
75.76
41.1

Associated Gene:

Gene:
MICAL2
Ensembl Gene ID:
ENSAPLG00000015960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032052
657280 - 710419
53140
ENSAPLT00000020974
659967 - 710419
50453
ENSAPLT00000016689
657280 - 710419
53140
ENSAPLT00000045999
659967 - 710419
50453
ENSAPLT00000037244
659967 - 710419
50453